Experts in metagenomics data analysis

Whole-genome shotgun metagenomics analyses

Choosing the best bioinformatic tools available is an essential step in bioinformatic analyses of whole-genome metagenomics. And whole-genome metagenomic assemblies require high-performance computing infrastructures. At AllGenetics, we ensure expert assessment and state-of-the-art metagenomic workflows along with suitable computational resources for your project.

How we work

In our current workflows, we:

  • Pre-process the raw high-throughput sequencing data.
  • Run a raw read assignment method on the processed reads and the assembly.
  • Assemble or co-assemble the metagenomes.
  • Bin the assembly with different algorithms, and consolidate the bin sets.
  • Quantify the abundances of the draft genomes (bins) across the samples.
  • Determine the taxonomy of each bin.
  • Functionally annotate the bins.
  • Generate different visualisations of the results.

What you receive

A report with a summary of the methods followed.

The results of the bioinformatic analysis including demultiplexing, pre-processing and quality control of the raw data, de novo assembly, binning, taxonomic assignment, and automatic functional annotation.

If you require additional analyses, please let us know and we will do our best to meet your needs.

At no additional cost, our project specialists will be available to you after project delivery and during the editorial process of your scientific articles. We offer up to five 60-min sessions per project, depending on the project size.

Contact us

Please let us know what your specific bioinformatics needs are. Once all the steps of the project are defined, our bioinformatics team will do their best to deliver your results promptly and cost-effectively.

Services