Experts in SNP data analysis

We analyse your genotyping-by-sequence data

Identifying and calling single nucleotide polymorphisms (SNPs) from genotyping-by-sequencing (GBS) is anything but a simple bioinformatic analysis and includes several computationally-intensive steps in which the raw data must be processed to catch anomalies. At AllGenetics, we ensure expert assessment and state-of-the-art SNP genotyping workflows along with suitable computational resources for your project.

How we work

In our current workflows, we:

  • Pre-process the raw high-throughput sequencing data.
  • Map reads to a reference genome or assemble them de novo.
  • Identify and call SNPs.
  • Obtain a VCF file.

What you receive

A report with a summary of the methods followed.

The results of the bioinformatic analyses including demultiplexing, pre-processing and quality control of the raw data, de novo or reference-guided assembly, removal of duplicate reads, and generation of VCF files.

If you require additional analyses, please let us know and we will do our best to meet your needs.

At no additional cost, our project specialists will be available to you after project delivery and during the editorial process of your scientific articles. We offer up to five 60-min sessions per project, depending on the project size.

Contact us

Please let us know what your specific bioinformatics needs are. Once all the steps of the project are defined, our bioinformatics team will do their best to deliver your results promptly and cost-effectively.